PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 496aa    MW: 54771.4 Da    PI: 9.3516
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056789123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_010541340.1 67 FVCEICNKGFQRDQNLQLHRRGH 89
                    89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.04E-66689No hitNo description
PfamPF121717.9E-56789IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM0035591109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-4132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.04E-6139164No hitNo description
SMARTSM00355160144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MMMPDDHRHL SFPNFVHQQE PINPNPNPNP PTSTNPSKKR RNLPGTPDPD AEVIALSPNS  60
LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTN KEQVKKKVYI CPEKSCVHHD  120
PARALGDLTG IKKHYSRKHG EKKWKCEKCS KKYAVMSDWK AHCKICGTRE YRCDCGILFS  180
RKDSFITHRA FCDALAEEST RFTWVPPSAS QNATPPQLDH HTLMGPCLNL SRNTNVFSGQ  240
NCTSSCLPDQ ISPLMNVFGL SSSSSSSSSP SGTSDSLHTL WQLQGQFSHQ WPLDGNTNNV  300
FQRGMAKNQE GEIKKGSNIS GSSRSLNQTD PSLASLFTPN NNDSDNNNIC RSDPYMSATA  360
LLQKAAQMGS TRSNSNGSTT ALGLMTSTLF SNMHQNSNFP KKQTDPTSKS SQGSPGNMDK  420
GSLPGAREGG SSAREVVDEA GGLTRDFLGV GRHEQDRLQH HLYPSNRPLM LKHDRPDLAP  480
ATVGSAAMDM GSTLLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541340.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ944L31e-145IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLA0A0D3A8N01e-170A0A0D3A8N0_BRAOL; Uncharacterized protein
STRINGBra033840.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-132C2H2-like zinc finger protein